Bioinformatics

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Publications
- Biodatabase Mining
- Bioinformatics: Sequence and Genom...
- Support Vector Machines - Book


Publications Journals
- BMC Bioinformatics
- Bioinformatics
- Journal of Biomedical Infomatics
- Mutation Research/Mutation Researc...
- DNA Sequence

Education Courses
- Bioinformatics and Computational B...
- Bioinformatics.ca: Course Work
- Biocomputing Hypertext Coursebook
- University of Colorado Bioinformat...
- Bioinformatics and drug research
- Bioinformatics FAQ
- Institute for Genomics and Bioinfo...
- Bioinformatics Resources
- Bioinformatics On-line Courses and...
- Bioinformatics In Latin America
- Computational Biology at Stony Brook
- Index of Computational Molecular B...
- Protein sequence analysis: A pract...

Companies
- Genamics
- Gene Codes Corp.
- IO Informatics
- Ingenuity Pathways Analysis
- Oncomine
- InPharmix
- Gene Biotechnologies
- OmniViz Inc.
- Ocimum Biosolutions
- Nonlinear Dynamics
- NimbleGen Systems, Inc.
- NextBio
- MiraiBio Inc
- Millegen
- Prokaria
- Quantiom
- SilicoCyte
- Rosetta Biosoftware
- Relevant Software Inc.
- MetaHelix Life Sciences
- CubicDesign
- Inpharmatica
- EPitope Informatics
- ForScience, Inc.
- Bioinformatics Solutions Inc.
- BioInformatics Services
- IT.Omics
- Iobion Informatics LLC
- Insilicos
- Gene-IT
- Matrix Science
- TIB MOLBIOL
- TimeLogic Corporation
- Tripos, Inc.
- UniPro
- United Bioinformatica Inc. (UBI)
- VizXlabs
- Thermo Electron Corporation
- Teranode Corporation
- MDL Information Systems
- MediCel Ltd.
- Metabolic Explorer
- Metalife AG
- Samurai Scientific
- SBI Science LLC
- Seascape Learning
- Silicon Genetics
- Syngene
- Tahoe Informatics
- Biodatabases
- BioDiscovery, Inc.
- Biomax Informatics AG
- Biosiris
- BioSoftSolutions
- Bioxing
- BioXpr SA
- Bioxtal, proteomic services
- CeuticalSoft
- CLC bio
- BioBind
- BioBase
- 3rd Millennium, Inc.
- AbOrygen - Intuitive bioinformatics
- Accelrys
- AgileBio
- AlgoNomics
- Ariadne Genomics Inc.
- Array Genetics, Inc.
- Bio::Neos
- Bioalma
- BioBase
- Clondiag Chip Technologies
- Compugen
- Core LIMS
- INCOGEN, Inc.
- Industry Support Programme
- Informagen
- Informatics
- Invenio Biosolutions
- LabVantage Solutions
- LION Bioscience AG
- Logical Depth
- Ludsi
- MathEcology, LLC
- Health Discovery Corporation Home Page
- Geospiza, Inc.
- Decodon
- DNA Miners
- DNA Software, Inc.
- GeneData
- GeneGo Inc.
- Genolyze
- Genomatica, Inc.
- Genomatix Software GmbH
- Genomining
- Genostar
- MathSoft Inc.

Software
- ADF MAGE-ML
- Sockeye
- Expression Profiler
- FASTA
- DNA Counter
- DNAMAN
- EMBOSS
- BiOpen
- Darwin
- AlmaKnowledgeServer
- AnnHyb
- APBioKnoppix
- ARCiB -- Accessible Retired Comput...
- BioEdit
- Biological Concept Diagram Editor
- Friend
- Meta-MEME
- MedScan
- Msa.cgb.ki.se
- Nano+Bio-Centre
- Sequence Analysis
- SeWeR
- PDRAW32
- STRAP
- Premier Biosoft International
- RGBG Analyzer
- Seqtools
- GDE
- KoriBlast
- GoCore
- Genome-tools Web Interface
- LimmaGUI
- MaGe (Magnifying Genomes) - Microb...
- XDigitize
- WU-BLAST
- The ARB Project
- FASTA Convertor
- MIRA
- NCBI BLAST
- Phrap/Consed
- PHRED
- MELTING
- Mauve
- Genespotter
- DNPTrapper
- Gints
- HMMER
- INCA - INteractive Codon Analysis
- JAligner
- JSTRING
- MARBL
- Sfold
- PhyloSort
- STRING

Software (part 2)
- Tandem Repeats Finder

Companies Services
- ITC Software - Scientific Software...
- Northwoods DNA
- The Biotechnology Center, UIUC
- Professional Bioinformatics software
- Solennia
- Synamatix Sdn Bhd
- Life Sciences Consulting
- Janssen Genomics bioinformatics se...
- Bio Balance
- CSIRO Bioinformatics
- Evolutionary BioInformatics
- Expression Analysis, Inc.
- Hippron Physiomics Inc.
- AKos Consulting and Solutions GmbH
- AMITA Databases
- Atragene
- BioInfoExperts
- Biomatica
- Amplicon Express
- Biomax Informatics AG
- BioRainbow
- BioXpr SA
- CBS Computational Biology Services
- Centient Consulting, Inc.
- Integrative BioInformatics

Software Software Development
- BioPHP
- The XEMBL Project
- Bionconductor
- NCICB Core Infrastructure
- BioQuery
- BioRuby
- The Darwin Manual
- BioWarehouse Database Integration ...
- BioPython
- Bioperl.org
- EST2uni
- Boulder.pm
- Cell Electrophysiology Simulation ...
- CLEML: Carbon Labeling Experiment ...
- Dynamite
- BioLisp.org
- AcePerl
- AceDB
- Bielefeld University Bioinformatic...
- Biochemical Algorithms Library
- BioJava.org
- High Throughput Screening Tools
- Sight
- The Scriptome
- InterMine
- JCell
- MolTalk
- NeoBio
- Pathway Tools
- Phylogenetic Analysis Library
- PISE

Directories
- Bioinformatics Sites
- Bioinform
- DNA and Protein Analysis Toolkit
- UBC Bioinformatics Centre Resource...
- Bioinformatics.fr
- CMS Molecular Biology Resources
- European Bioinformatics Institute
- Genome Programs
- The National Center for Biotechnol...
- Bioinformatik.de
- Biosupport

Online Services
- BioModels Database
- Biomolecular Interaction Network D...
- BioMolecular Engineering Research ...
- BioGRID
- BIOBASE
- Bacterial Identification
- Advanced Genetics Wizard
- Gene Expression Data Analysis
- ProPred-I
- JustBio: Online Tool Set
- IHOP
- Transterm - a database of mRNA reg...
- Verbumculus Genetic Sequence Analyzer
- Web Services at Institute of Micro...
- WebACT
- YMF - DNA Motif Finding Program
- Zinc Finger Tools
- Functional Human Gene Network
- Gene and Protein Synonyms DataBase
- Genepop on the Web
- Geneva Bioinformatics (GeneBio) S.A.
- IBM Bioinformatics Group - Tools &...
- INCBI Irish National Centre for Bi...
- Information Génomique et Structura...
- InstaSeq
- Ligand-Gated Ion Channel Database
- LongTrace DNA Sequencing Service
- FIE (5 end Information Extraction)
- ERGO
- Bioverse
- Canadian Bioinformatics Help Desk
- Carnac
- Center for Biological Sequence Ana...
- Center Structural Biology: Program...
- CUBIC: Columbia University Bioinfo...
- Entrez Browser
- MedMiner
- Molecular Informatics Resource for...
- Molecular Interactions Database (MINT)
- QualTrace DNA Sequencing
- ReadSeq
- SA National Bioinformatics Institute
- Scansite
- Searching GenBank
- Sequence Analysis (Bielefeld Unive...
- Simulation programs for teaching p...
- Systems Biology of Photosynthesis
- TFM Explorer
- Transcription Element Search Softw...
- QGRS Mapper
- PubCrawler
- Mulan
- My Genomics Resource Centre
- NIH BioInformatics and Molecular A...
- PANDORA
- ParAlign
- PEDANT
- PIR-International Protein Sequence...
- PlasMapper
- ProCKSI: Similarity Comparison of ...
- ProteinLounge
- Transcription Element Search Softw...

Companies Drug Discovery
- Rosetta Inpharmatics
- QuantumLead
- Quantum Pharmaceuticals
- Genoscience
- Genomining Virtual Screening Software
- BlueGnome
- Critical Outcome Technologies
- Equbits
- GenOdyssee SA
- Structural Genetics

Online Services Genome Databases
- Human Genome Sequencing Center
- Human Ageing Genomic Resources
- Maize Genome Assembly Project
- Saccharopolyspora erythraea genome
- SOL Genomics Network
- MaizeGDB
- Mouse Genome Informatics
- Rat Genome Database
- Saccharomyces Genome Database (SGD)
- EURExpress II
- FlyMine
- GenomeSeek
- Gramene: A comparative genomic res...
- HCNetDat
- X:Map Genome Browser
- Dictyostelium discoideum genome an...
- DNA Structural Atlas
- European Molecular Biology Network
- Society for Bioinformatics in the ...
- The Bioinformatics Organization, Inc.
- The Ensembl Project
- The International Society for Comp...
- Bioinformatics Resources
- Bioinformatics and Biological Comp...
- Wikiomics

Online Services Phylogenetic Analysis
- Vista tools
- TreeTop
- TreeGen
- GRIMM/MGR
- ClustalW
- MatTree
- MultAlign
- Phylogeny at Pasteur
- SplitsTree 2

Online Services Protein Analysis
- PredictProtein Server
- The Protein Information Resource
- PFP: Automated Function Prediction...
- Phyre- Protein Homology/analogY Re...
- Protein Structure Prediction Serve...
- MODBASE
- Isoelectric Point Estimator
- ProtFun
- Proteomics Tools
- Jpred
- Protein Structure Prediction Using...
- Melanie II 2-D Analysis Software
- Molecular Biology Tools Online
- Molecules To Go

Online Services Protein Analysis (part 2)
- MSDmotif
- MultiProt
- Munich Information Center for Prot...
- NUMODs Motifs Finder
- Protonet
- JAligner
- Quaternary Structure Prediction
- Wurst
- UniProt
- TRANSFAC-The Transcription Factor ...
- SWISS-PROT + TrEMBL
- Swiss-Pdb Viewer
- Swiss-Model
- SSM
- PDB Ligand Environment
- Betapred
- COLORADO3D
- ConSurf
- Dali server
- DisEMBL
- ELM - Functional Sites in Proteins
- EMBL Bioinformatic Harvester
- Entelechon Backtranslation tool
- ESyPred3D
- IMolTalk
- 3D-PSSM Fold Recognition
- 3D-JIGSAW
- InterPro - The Integrated Resource...

Online Services Homology Detection
- GWBLAST
- Interactive Blast Query
- HMM library for all proteins of kn...
- ESPript
- BLAST
- GeneMatcher
- Meta-MEME
- Mreps : maximal tandem repeats search
- PatternHunter
- Sequence Alignment and Modeling System
- The ISREC Group Servers
- WU-BLAST Archives

Education
- Bioinformatics
- University of Colorado Bioinformat...
- UBC Bioinformatics Centre: Tutorials
- The Swiss Institute of Bioinformat...
- Peptide Sequencing Simulation Software
- Bimatics
- BioCampus
- Bioinformatics and Computational B...
- Geospiza, Inc. Education
- Helsinki Masters in Bioinformatics
- Human Genome Project Education Res...
- Master in Bioinformatics for Heal...
- Masters in Bioinformatics at Glasg...
- MBB452a: Genomics and Bioinformati...
- Medical University of South Carolina
- NCBIs Genes and Disease
- New Zealand Bioinformatics Conference
- Northeastern University Bioinform...
- Computational Molecular Biology Tr...
- Chickscope 1.5
- Bioinformatics at Hamilton College
- Bioinformatics Centre - University...
- Bioinformatics Information
- Bioinformatics Institute
- Bioinformatics Institute of India
- Bioinformatics web
- Biology Student WorkBench
- Boston University Bioinformatics G...
- British Columbia Bioinformatics Tr...
- C.elegans Network
- Openhelix
- Perlsource Informatics

Hardware
- Kick Communications
- Systolic Accelerator for Molecular...
- LongTrace:Box DNA Trace Improvemen...

Research Groups
- Bioinformatics and Evolutionary Ge...
- Bioinformatics at Medical College ...
- BIOMAP Project
- Bioinformatics and Computational M...
- Artificial Intelligence Research L...
- Biochemical Networks Modeling Group
- Bioinfo-hr.org
- Bioinfo.PL - polish bioinformatics...
- AG BIODV: Software Development for...
- Animal Bioinformatics and Computat...
- Center for Computational Biology a...
- Central Plantation Crops Research ...
- The Institute for Genomic Research
- The Centre for Integrative Bioinfo...
- The Centre for Bioinformation Scie...
- The Bioinformatics Group at the Pa...
- Sudarsky Center for Computational ...
- Structural Bioinformatics Lab at B...
- Structural Bioinformatics Group
- Roslin Institute Bioinformatics
- NDSU Plant Abiotic Stress, Genomic...
- National Bioinformatics Research C...
- Molecular Information Theory
- Modlab - The Molecular Design Labo...
- Theoretical and computational biol...
- Virtual Institute of Bioinformatic...
- Virginia Bioinformatics Institute
- Vancouver Bioinformatics User Group
- USGS Center for Biological Informatics
- USCS Genome Bioinformatics
- UCLA Bioinformatics
- UC Santa Cruz Bioinformatics Resea...
- Lussier Phenomics Research Group
- Linnaeus Centre for Bioinformatics
- Computational Functional Genomics ...
- Computational Biology Research Center
- Computational Biology Center at Me...
- Cologne University Bioinformatics ...
- Center of Excellence in Bioinforma...
- Brutlag Bioinformatics Group
- Biomolecular Modelling
- Bioinformatics Unit at University ...
- BioInformatics Institute of Singapore
- Bioinformatics Centre, IMTECH, Cha...
- BioInformatics Centre - Singapore
- Bioinformatics Center at the Unive...
- Computational Genetics Laboratory
- Computational Genomics Laboratory
- Computational Molecular Biology Tr...
- Lawrence H. Baker Center for Bioin...
- Lab for Biocomputing and Informati...
- Institute of Molecular Bioscience
- High Performance Computing and Inf...
- Helix Bioinformatics Group
- Hanah Margalits Bioinformatics Lab
- Gerstein Group
- Genome Analysis and System Modelin...
- GeneSilico
- Gary Churchills Statistical Geneti...
- Dr. G P S Raghava
- Discovery Systems Laboratory at Va...
- Discovery Informatics and Computin...
- DISCO Research Group
- CVS and CIR Bioinformatics
- Computational Structural Biology -...
- Bioinformatics and Computational B...

Online Services Molecular Biology Tools
- NEBcutter
- WatCut
- Bioexplorer Toolbar
- REBASE
- RestrictionMapper
- Web Primer
- Webcutter 2.0

Companies Hardware and Instrumentation
- Clondiag
- Asper Biotech


Employment
- BioPlanet
- Bioinformatics Jobs

Online Services Gene Expression and Regulation
- GenomeScan
- MiCoViTo
- Psort
- GenScan Server
- Mascot
- Microarray Database Gateway

Research Groups Individuals
- Flags and Lollipops
- Alternative Splicing Blog


Online Services Ecological Databases
- BioGIS