Bioinformatics

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Publications
- Biodatabase Mining
- Bioinformatics: Sequence and Genom...
- Support Vector Machines - Book


Publications Journals
- BMC Bioinformatics
- Bioinformatics
- Journal of Biomedical Infomatics
- DNA Sequence
- Mutation Research/Mutation Researc...

Companies
- IO Informatics
- Genamics
- Gene Codes Corp.
- InPharmix
- Ingenuity Pathways Analysis
- Gene Biotechnologies
- Oncomine
- Gene-IT
- Insilicos
- Iobion Informatics LLC
- IT.Omics
- Prokaria
- Bioinformatics Solutions Inc.
- BioInformatics Services
- Inpharmatica
- CubicDesign
- Informagen
- GeneGo Inc.
- GeneData
- EPitope Informatics
- NextBio
- Rosetta Biosoftware
- AgileBio
- SilicoCyte
- MetaHelix Life Sciences
- NimbleGen Systems, Inc.
- Millegen
- Ocimum Biosolutions
- Nonlinear Dynamics
- ForScience, Inc.
- MiraiBio Inc
- Tahoe Informatics
- Quantiom
- OmniViz Inc.
- Relevant Software Inc.
- Metalife AG
- Informatics
- Matrix Science
- MDL Information Systems
- Invenio Biosolutions
- LabVantage Solutions
- LION Bioscience AG
- Logical Depth
- Ludsi
- MathEcology, LLC
- MathSoft Inc.
- Metabolic Explorer
- MediCel Ltd.
- AlgoNomics
- Ariadne Genomics Inc.
- Array Genetics, Inc.
- Bio::Neos
- Bioalma
- BioBase
- BioBase
- BioBind
- Biodatabases
- BioDiscovery, Inc.
- 3rd Millennium, Inc.
- AbOrygen - Intuitive bioinformatics
- Accelrys
- Compugen
- Core LIMS
- Decodon
- DNA Miners
- DNA Software, Inc.
- Genolyze
- Genomatica, Inc.
- Genomatix Software GmbH
- Genomining
- Genostar
- Geospiza, Inc.
- Health Discovery Corporation Home Page
- INCOGEN, Inc.
- Clondiag Chip Technologies
- Biomax Informatics AG
- Biosiris
- BioSoftSolutions
- Bioxing
- BioXpr SA
- Bioxtal, proteomic services
- CeuticalSoft
- CLC bio
- Industry Support Programme
- Tripos, Inc.
- UniPro
- United Bioinformatica Inc. (UBI)
- VizXlabs
- TimeLogic Corporation
- TIB MOLBIOL
- Thermo Electron Corporation
- Samurai Scientific
- SBI Science LLC
- Seascape Learning
- Silicon Genetics
- Syngene
- Teranode Corporation

Research Groups
- Virtual Institute of Bioinformatic...
- Genome Analysis and System Modelin...
- The Centre for Integrative Bioinfo...
- Structural Bioinformatics Group
- Cologne University Bioinformatics ...
- Center for Computational Biology a...
- Bioinformatics at Medical College ...
- Central Plantation Crops Research ...
- Computational Biology Research Center
- Computational Functional Genomics ...
- Computational Genetics Laboratory
- Computational Genomics Laboratory
- Computational Molecular Biology Tr...
- Computational Biology Center at Me...
- Bioinformatics and Computational M...
- Bioinformatics and Evolutionary Ge...
- BioInformatics Institute of Singapore
- BIOMAP Project
- Center of Excellence in Bioinforma...
- Theoretical and computational biol...
- The Centre for Bioinformation Scie...
- The Institute for Genomic Research
- The Bioinformatics Group at the Pa...
- Computational Structural Biology -...
- National Bioinformatics Research C...
- NDSU Plant Abiotic Stress, Genomic...
- Roslin Institute Bioinformatics
- Structural Bioinformatics Lab at B...
- Sudarsky Center for Computational ...
- Modlab - The Molecular Design Labo...
- Virginia Bioinformatics Institute
- UCLA Bioinformatics
- Bioinformatics Unit at University ...
- USCS Genome Bioinformatics
- Biomolecular Modelling
- USGS Center for Biological Informatics
- Brutlag Bioinformatics Group
- Vancouver Bioinformatics User Group
- Linnaeus Centre for Bioinformatics
- UC Santa Cruz Bioinformatics Resea...
- CVS and CIR Bioinformatics
- Lawrence H. Baker Center for Bioin...
- Lab for Biocomputing and Informati...
- Institute of Molecular Bioscience
- DISCO Research Group
- High Performance Computing and Inf...
- Discovery Informatics and Computin...
- Hanah Margalits Bioinformatics Lab
- Gerstein Group
- GeneSilico
- Gary Churchills Statistical Geneti...
- Discovery Systems Laboratory at Va...
- Helix Bioinformatics Group
- Molecular Information Theory
- Lussier Phenomics Research Group
- Dr. G P S Raghava
- Bioinformatics Centre, IMTECH, Cha...
- BioInformatics Centre - Singapore
- Bioinformatics Center at the Unive...
- Bioinformatics and Computational B...
- Bioinfo.PL - polish bioinformatics...
- Bioinfo-hr.org
- Biochemical Networks Modeling Group
- Artificial Intelligence Research L...
- Animal Bioinformatics and Computat...
- AG BIODV: Software Development for...

Software
- BioEdit
- Genome-tools Web Interface
- ADF MAGE-ML
- ARCiB -- Accessible Retired Comput...
- Sockeye
- APBioKnoppix
- Sequence Analysis
- Seqtools
- RGBG Analyzer
- AnnHyb
- PDRAW32
- AlmaKnowledgeServer
- Msa.cgb.ki.se
- FASTA
- Biological Concept Diagram Editor
- BiOpen
- Friend
- DNA Counter
- DNAMAN
- EMBOSS
- Expression Profiler
- GDE
- GoCore
- SeWeR
- STRAP
- Tandem Repeats Finder
- Premier Biosoft International
- INCA - INteractive Codon Analysis
- KoriBlast
- LimmaGUI
- MaGe (Magnifying Genomes) - Microb...
- MedScan
- Meta-MEME
- Nano+Bio-Centre
- Darwin
- JAligner
- Genespotter
- XDigitize
- WU-BLAST
- The ARB Project
- STRING
- Sfold
- PhyloSort
- PHRED
- FASTA Convertor
- DNPTrapper
- Gints
- Phrap/Consed
- NCBI BLAST
- MIRA
- MELTING
- Mauve
- MARBL
- JSTRING
- HMMER

Education Courses
- Bioinformatics and Computational B...
- Bioinformatics.ca: Course Work
- Biocomputing Hypertext Coursebook
- Protein sequence analysis: A pract...
- Bioinformatics Resources
- Bioinformatics On-line Courses and...
- Bioinformatics In Latin America
- Bioinformatics and drug research
- Institute for Genomics and Bioinfo...
- University of Colorado Bioinformat...
- Computational Biology at Stony Brook
- Bioinformatics FAQ
- Index of Computational Molecular B...

Online Services
- Information Génomique et Structura...
- BioModels Database
- BioGRID
- Bacterial Identification
- Zinc Finger Tools
- WebACT
- IHOP
- Gene Expression Data Analysis
- Biomolecular Interaction Network D...
- BioMolecular Engineering Research ...
- JustBio: Online Tool Set
- Simulation programs for teaching p...
- ProPred-I
- Advanced Genetics Wizard
- BIOBASE
- Verbumculus Genetic Sequence Analyzer
- YMF - DNA Motif Finding Program
- Web Services at Institute of Micro...
- Transterm - a database of mRNA reg...
- Transcription Element Search Softw...
- Transcription Element Search Softw...
- TFM Explorer
- Systems Biology of Photosynthesis
- Sequence Analysis (Bielefeld Unive...
- Searching GenBank
- Scansite
- SA National Bioinformatics Institute
- ReadSeq
- QualTrace DNA Sequencing
- INCBI Irish National Centre for Bi...
- IBM Bioinformatics Group - Tools &...
- Geneva Bioinformatics (GeneBio) S.A.
- Genepop on the Web
- Gene and Protein Synonyms DataBase
- Functional Human Gene Network
- FIE (5 end Information Extraction)
- ERGO
- Entrez Browser
- CUBIC: Columbia University Bioinfo...
- Center Structural Biology: Program...
- Center for Biological Sequence Ana...
- Carnac
- Canadian Bioinformatics Help Desk
- InstaSeq
- Ligand-Gated Ion Channel Database
- LongTrace DNA Sequencing Service
- QGRS Mapper
- PubCrawler
- ProteinLounge
- ProCKSI: Similarity Comparison of ...
- PlasMapper
- PIR-International Protein Sequence...
- PEDANT
- ParAlign
- PANDORA
- NIH BioInformatics and Molecular A...
- My Genomics Resource Centre
- Mulan
- Molecular Interactions Database (MINT)
- Molecular Informatics Resource for...
- MedMiner
- Bioverse

Education
- Peptide Sequencing Simulation Software
- Openhelix
- Bioinformatics
- Northeastern University Bioinform...
- Master in Bioinformatics for Heal...
- MBB452a: Genomics and Bioinformati...
- Medical University of South Carolina
- NCBIs Genes and Disease
- New Zealand Bioinformatics Conference
- The Swiss Institute of Bioinformat...
- University of Colorado Bioinformat...
- Masters in Bioinformatics at Glasg...
- Bioinformatics Institute of India
- UBC Bioinformatics Centre: Tutorials
- Bioinformatics Centre - University...
- Perlsource Informatics
- Bioinformatics and Computational B...
- Geospiza, Inc. Education
- Helsinki Masters in Bioinformatics
- Human Genome Project Education Res...
- Computational Molecular Biology Tr...
- Chickscope 1.5
- Bioinformatics at Hamilton College
- Bioinformatics Information
- Bioinformatics Institute
- Bioinformatics web
- Biology Student WorkBench
- Boston University Bioinformatics G...
- British Columbia Bioinformatics Tr...
- C.elegans Network
- BioCampus
- Bimatics

Online Services Protein Analysis
- PredictProtein Server
- PFP: Automated Function Prediction...
- Quaternary Structure Prediction
- Swiss-Model
- Phyre- Protein Homology/analogY Re...
- PDB Ligand Environment
- Molecules To Go
- Molecular Biology Tools Online
- DisEMBL
- Protein Structure Prediction Serve...
- SSM
- The Protein Information Resource
- ProtFun
- Proteomics Tools
- Swiss-Pdb Viewer
- Wurst
- UniProt
- TRANSFAC-The Transcription Factor ...
- SWISS-PROT + TrEMBL
- Protonet
- Protein Structure Prediction Using...
- NUMODs Motifs Finder
- Munich Information Center for Prot...
- MultiProt
- MSDmotif
- MODBASE
- Melanie II 2-D Analysis Software
- Jpred
- JAligner
- Isoelectric Point Estimator
- InterPro - The Integrated Resource...

Online Services Protein Analysis (part 2)
- IMolTalk
- ESyPred3D
- Entelechon Backtranslation tool
- EMBL Bioinformatic Harvester
- ELM - Functional Sites in Proteins
- Dali server
- ConSurf
- COLORADO3D
- Betapred
- 3D-PSSM Fold Recognition
- 3D-JIGSAW

Software Software Development
- BioPHP
- BioRuby
- BioPython
- NCICB Core Infrastructure
- The XEMBL Project
- EST2uni
- Bionconductor
- BioQuery
- Bioperl.org
- BioJava.org
- AceDB
- BioWarehouse Database Integration ...
- The Darwin Manual
- The Scriptome
- AcePerl
- Bielefeld University Bioinformatic...
- Biochemical Algorithms Library
- BioLisp.org
- Sight
- PISE
- Phylogenetic Analysis Library
- Pathway Tools
- NeoBio
- MolTalk
- JCell
- InterMine
- High Throughput Screening Tools
- Dynamite
- CLEML: Carbon Labeling Experiment ...
- Cell Electrophysiology Simulation ...
- Boulder.pm

Companies Services
- Solennia
- Professional Bioinformatics software
- ITC Software - Scientific Software...
- The Biotechnology Center, UIUC
- Synamatix Sdn Bhd
- Northwoods DNA
- Life Sciences Consulting
- Evolutionary BioInformatics
- BioRainbow
- BioInfoExperts
- Bio Balance
- Atragene
- Amplicon Express
- AMITA Databases
- AKos Consulting and Solutions GmbH
- CSIRO Bioinformatics
- Expression Analysis, Inc.
- Hippron Physiomics Inc.
- Centient Consulting, Inc.
- Integrative BioInformatics
- CBS Computational Biology Services
- BioXpr SA
- Janssen Genomics bioinformatics se...
- Biomax Informatics AG
- Biomatica

Online Services Genome Databases
- Saccharomyces Genome Database (SGD)
- Rat Genome Database
- Mouse Genome Informatics
- MaizeGDB
- Dictyostelium discoideum genome an...
- FlyMine
- SOL Genomics Network
- Saccharopolyspora erythraea genome
- Maize Genome Assembly Project
- Human Genome Sequencing Center
- Human Ageing Genomic Resources
- HCNetDat
- Gramene: A comparative genomic res...
- GenomeSeek
- EURExpress II
- X:Map Genome Browser

Directories
- Bioinformatics Sites
- Bioinform
- Bioinformatics.fr
- DNA and Protein Analysis Toolkit
- UBC Bioinformatics Centre Resource...
- CMS Molecular Biology Resources
- European Bioinformatics Institute
- Genome Programs
- The National Center for Biotechnol...
- Bioinformatik.de
- Biosupport

Companies Drug Discovery
- Equbits
- GenOdyssee SA
- Genomining Virtual Screening Software
- Genoscience
- BlueGnome
- Quantum Pharmaceuticals
- Rosetta Inpharmatics
- QuantumLead
- Critical Outcome Technologies
- Structural Genetics

Online Services Homology Detection
- GWBLAST
- Interactive Blast Query
- HMM library for all proteins of kn...
- ESPript
- WU-BLAST Archives
- The ISREC Group Servers
- Sequence Alignment and Modeling System
- PatternHunter
- Mreps : maximal tandem repeats search
- Meta-MEME
- GeneMatcher
- BLAST
- Bioinformatics and Biological Comp...
- The International Society for Comp...
- Society for Bioinformatics in the ...
- The Bioinformatics Organization, Inc.
- European Molecular Biology Network
- DNA Structural Atlas
- The Ensembl Project
- Bioinformatics Resources
- Wikiomics

Online Services Phylogenetic Analysis
- Vista tools
- TreeTop
- TreeGen
- SplitsTree 2
- MultAlign
- GRIMM/MGR
- ClustalW
- MatTree
- Phylogeny at Pasteur

Online Services Molecular Biology Tools
- NEBcutter
- WatCut
- Web Primer
- RestrictionMapper
- REBASE
- Bioexplorer Toolbar
- Webcutter 2.0

Online Services Gene Expression and Regulation
- GenomeScan
- MiCoViTo
- GenScan Server
- Psort
- Microarray Database Gateway
- Mascot

Hardware
- Kick Communications
- LongTrace:Box DNA Trace Improvemen...
- Systolic Accelerator for Molecular...


Employment
- BioPlanet
- Bioinformatics Jobs

Research Groups Individuals
- Alternative Splicing Blog
- Flags and Lollipops

Companies Hardware and Instrumentation
- Clondiag
- Asper Biotech


Online Services Ecological Databases
- BioGIS